Blog

• 2021
• 2021-12-03 » Retrieving SRA data from AWS Glacier storage
• 2021-06-14 » Downloading SRA data via GCP
• 2020
• 2020-10-29 » Single-cell ATAC + RNA co-assay methods
• 2020-08-16 » Iterative epigenomic analyses of the same single cell
• 2020-07-07 » Seeking the K99
• 2020-07-03 » Community detection
• 2020-06-07 » Reflections on a paper a day
• 2020-04-05 » Installing PyTorch
• 2019
• 2019-04-01 » Grouping scATAC-seq reads
• 2017
• 2017-10-04 » bioRxiv 2017 update
• 2017-09-14 » Bioinformatics snippets
• 2017-04-09 » Using python decorators
• 2017-04-03 » Create a computational lab notebook with bookdown
• 2017-03-03 » Installing Magic
• 2016
• 2016-09-22 » R demo
• 2016-07-12 » smRNA analysis notes
• 2016-03-29 » WGBS Analysis notes -- BS-seeker2
• 2016-03-01 » bioRxiv
• 2016-02-23 » A paper a day
• 2016-02-18 » Lorne Genome 2016 presentation
• 2015
• 2015-10-12 » Extract reads from bam file by read name
• 2014
• 2014-11-04 » Estimation of insert size from sam / bam files
• 2014-10-29 » MethyC-Seq Analysis Notes