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Stuart, T., Eichten, S. R., Cahn, J., Karpievitch, Y., Borevitz, J. O. & Lister, R. Population scale mapping of novel transposable element diversity reveals links to gene regulation and epigenomic variation. eLife (2016). doi:10.7554/eLife.20777 biorxiv

Eichten, S. R., Stuart, T., Srivastava, A., Lister, R. & Borevitz, J. O. DNA Methylation profiles of diverse Brachypodium distachyon aligns with underlying genetic diversity. Genome Research (2016). doi:10.1101/gr.205468.116 biorxiv

Kawakatsu T*, Stuart T*, Valdes M*, Breakfield N, Schmitz RJ, Nery JR, Urich MA, Han X, Lister R, Benfey PN & Ecker JR. Unique cell-type-specific patterns of DNA methylation in the root meristem. Nature Plants (2016). doi:10.1038/nplants.2016.58

* denotes equal contribution

Book chapters

Stuart, T., Buckberry, S., & Lister, R. Approaches for the Analysis and Interpretation of Whole Genome Bisulfite Sequencing Data. In Epigenome Editing: Methods and Protocols (2018). Edited by Albert Jeltsch and Marianne G. Rots, 299–310. New York, NY: Springer New York. doi:10.1007/978-1-4939-7774-1_17